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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7207058_7207102_R

Intron Information:

Intron Rank:
1067
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
7207058 - 7207102
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAGATGAT
5'SS Class:
major
3'SS Sequence:
ACATACCACATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
ACATCCGCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.1
67.7
37.5
Major BPS
73
0.57
1.2
74
41.2
Major PPT
54.8
0.11
0.9
47.6
34.6
Minor 5ss
34.7
-1.7
3.7
52
45.6
Minor BPS
45.1
-0.3
2.2
56.35
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001024
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001004
7207025 - 7210402
3378