About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7215941_7217001_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7215941 - 7217001
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
CAATTATTACCT
Flanking Amino Acid:
HLTDSDIEQGGSSEDGEKD*
Intron Amino Acid Position:
1454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
70.6
0.46
0.9
65
35.1
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
49.3
0.03
1.9
66.68
43.7

Associated Gene:

Gene:
LMTK2
Ensembl Gene ID:
ENSAPLG00000005439
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005625
7215912 - 7241318
25407