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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7219364_7220767_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7219364 - 7220767
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCATTT
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTGCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
GTTAACCAAACT
Flanking Amino Acid:
DDVTVYLFDQETPTKELGNR
Intron Amino Acid Position:
1327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
74.2
37.1
Major BPS
66.7
0.41
1
57.8
39
Major PPT
69.1
0.43
1
70.2
41.3
Minor 5ss
69.3
0.65
2.3
82.5
37.1
Minor BPS
46.9
-0.1
2.2
71.75
44.2

Associated Gene:

Gene:
LMTK2
Ensembl Gene ID:
ENSAPLG00000005439
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005625
7215912 - 7241318
25407