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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7223667_7223913_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7223667 - 7223913
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACTTT
5'SS Class:
major
3'SS Sequence:
CTTACTTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGTTTCTTACTT
Flanking Amino Acid:
PHLEQPYSDRWYEVLQFCWL
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
73.9
37.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
78.3
0.64
0.8
72.9
31.9
Minor 5ss
49.3
-0
3
69.9
42.9
Minor BPS
69.5
0.69
1.6
83.97
37.3

Associated Gene:

Gene:
LMTK2
Ensembl Gene ID:
ENSAPLG00000005439
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005625
7215912 - 7241318
25407