About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7224064_7225409_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7224064 - 7225409
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
GTTCTTAGAACG
Flanking Amino Acid:
SAEQNKYSNIWSLGVTLWEL
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
76.2
39
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
79
0.65
0.8
77.4
36.9
Minor 5ss
43.7
-0.7
2.6
56.9
42.5
Minor BPS
46.7
-0.3
1.7
55.31
39.5

Associated Gene:

Gene:
LMTK2
Ensembl Gene ID:
ENSAPLG00000005439
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005625
7215912 - 7241318
25407