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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7225532_7226190_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7225532 - 7226190
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTCGATAATATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGATAAT
U12 Branch Point Sequence:
TTGTCGATAATA
Flanking Amino Acid:
DYGIGFSRYKEDYIETDEKK
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
60.3
0.26
1.3
61.7
41.5
Major PPT
58.6
0.19
1
51.2
41.7
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
52.6
0.08
2.3
71.99
40.5

Associated Gene:

Gene:
LMTK2
Ensembl Gene ID:
ENSAPLG00000005439
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005625
7215912 - 7241318
25407