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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7226276_7228920_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7226276 - 7228920
Intron Length:
2645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTCTTACTA
Flanking Amino Acid:
AVMHKHNFVHSDLALRNCFL
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
88.1
28.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.8
0.69
0.9
74.4
35
Minor 5ss
45.1
-0.5
3.1
67
44.3
Minor BPS
66
0.5
1.6
74.21
38.4

Associated Gene:

Gene:
LMTK2
Ensembl Gene ID:
ENSAPLG00000005439
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005625
7215912 - 7241318
25407