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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7237228_7238402_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7237228 - 7238402
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTATCACTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TCTGACTTAACT
Flanking Amino Acid:
EQFLRNGEPYYILQHPNVLQ
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
78.3
0.7
1
80
32.1
Major PPT
75.4
0.57
0.9
66.7
39.3
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
71.2
0.74
1.6
84.76
41.8

Associated Gene:

Gene:
LMTK2
Ensembl Gene ID:
ENSAPLG00000005439
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005625
7215912 - 7241318
25407