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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7238522_7239022_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7238522 - 7239022
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TATCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTACTGATTT
Flanking Amino Acid:
QEIGNGWFGKVLLGEIYTGT
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.9
0.76
0.8
81
35.9
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
57.9
0.32
1.9
82.09
39.3

Associated Gene:

Gene:
LMTK2
Ensembl Gene ID:
ENSAPLG00000005439
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005625
7215912 - 7241318
25407