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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7290552_7291354_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7290552 - 7291354
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
AAGCGTTTAAGA
Flanking Amino Acid:
DIESALSSCQAADSFNYKSF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
78.6
37.2
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
88.5
0.87
0.8
81.2
36.5
Minor 5ss
33.5
-1.9
3.2
40.3
45.6
Minor BPS
45.5
-0.3
2
51.91
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005423
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005605
7290491 - 7291909
1419