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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7308872_7309244_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7308872 - 7309244
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTTATTAATT
Flanking Amino Acid:
DIAAALRDCQAPDSFSPKKF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.9
0.72
0.9
78.5
39.1
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
71.8
0.76
1.5
86.09
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005393
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005574
7308811 - 7309931
1121