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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7318629_7320248_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7318629 - 7320248
Intron Length:
1620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGGAG
5'SS Class:
major
3'SS Sequence:
TTTTAAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTAAATT
Flanking Amino Acid:
NPKLGPKEGEEEKKILFYHP
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55
44.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.4
0.64
0.9
75.8
37.9
Minor 5ss
33
-1.9
3.7
46
49.3
Minor BPS
63.7
0.51
1.6
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004993
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005209
7318524 - 7335590
17067