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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7320347_7320474_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7320347 - 7320474
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAGT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATATCTATATCT
Flanking Amino Acid:
GLCEAIVQFTRTFSPTKPAK
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
70.5
39.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
40.6
-1
3
58.1
46.1
Minor BPS
55.2
0.24
1.9
76.34
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004993
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005209
7318524 - 7335590
17067