About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7321805_7322442_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7321805 - 7322442
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTA
5'SS Class:
major
3'SS Sequence:
TTTTAACCACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTCTTTTAACC
Flanking Amino Acid:
VLQQCYSMYKLFNGTFVKAM
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69
38.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
68.5
0.42
0.9
61.5
40
Minor 5ss
38.3
-1.3
3.7
54.8
49.4
Minor BPS
71.2
0.65
1.2
74.92
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004993
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005209
7318524 - 7335590
17067