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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7328136_7329070_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7328136 - 7329070
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCTCT
5'SS Class:
weak_major
3'SS Sequence:
AATTATCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GTTAAATTATCT
Flanking Amino Acid:
EMPGNLQHYGRFLTGPLNLN
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
63.3
43.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
73.5
0.53
0.9
66.5
39.5
Minor 5ss
52.3
0.08
2.9
74.3
42
Minor BPS
48.2
-0
2.1
72.38
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004993
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005209
7318524 - 7335590
17067