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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7329835_7330181_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7329835 - 7330181
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ACATGCCATATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTCTTTACAT
Flanking Amino Acid:
MSAAVCFMIDASIPPTLEFC
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
59
0.2
1
51.4
37.7
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
63.6
0.5
1.7
80.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004993
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005209
7318524 - 7335590
17067