Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7333431_7334531_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7333431 - 7334531

Intron Length:

1101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAATGCTT

5'SS Class:

strong_major

3'SS Sequence:

AAACCTCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

CCTTCTTTACTT

Flanking Amino Acid:

ILGDINSDFSRVDEDEEIIV

Intron Amino Acid Position:

416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

75.3

40.4

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

71.3

0.48

0.9

66.6

39.4

Minor 5ss

36.8

-1.5

3.5

56.4

47.8

Minor BPS

62.6

0.48

1.6

74.65

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004993

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005209

7318524 - 7335590

17067