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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7336683_7337073_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7336683 - 7337073
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTTGTTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AGTACATAAATT
Flanking Amino Acid:
LRKMKDEELAKLIAEREAAE
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.2
37.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
79.1
0.65
0.9
77.9
35.5
Minor 5ss
47.1
-0.3
2.5
59.8
38.9
Minor BPS
49.3
0.02
1.9
69.37
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004779
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044439
7336475 - 7351067
14593
ENSAPLT00000032383
7336475 - 7339918
3444
ENSAPLT00000004934
7336475 - 7351067
14593