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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7342300_7343094_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7342300 - 7343094
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATCTAT
5'SS Class:
major
3'SS Sequence:
TAATCTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATATTTAATC
Flanking Amino Acid:
KMRQFLWMLNDFKLLSKQLT
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
69.8
37
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.8
0.47
1
65.5
39.7
Minor 5ss
48
-0.2
2.9
69.1
41.8
Minor BPS
64.7
0.44
1.4
69.47
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004779
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004934
7336475 - 7351067
14593
ENSAPLT00000044439
7336475 - 7351067
14593