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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7343244_7343349_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7343244 - 7343349
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTCCCAATT
Flanking Amino Acid:
NVIPTACHIQGILFSEQRRT
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.5
0.8
0.8
80.1
37.1
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
61.1
0.43
1.9
84.67
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004779
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004934
7336475 - 7351067
14593