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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7343430_7343977_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7343430 - 7343977
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCGCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
AAAAATGTAATT
Flanking Amino Acid:
LAFHIYHKEHKDKGLYLSKC
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
73.2
0.52
0.9
66.8
35.5
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
43.7
-0.4
2
58.18
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004779
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004934
7336475 - 7351067
14593