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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7344090_7344844_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7344090 - 7344844
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGGTTTGT
5'SS Class:
weak_major
3'SS Sequence:
CATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTTCATT
Flanking Amino Acid:
ITLAEMDRILSDKTPLEEIH
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.2
0.05
1.1
52.3
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85.7
0.8
0.7
84.9
29.6
Minor 5ss
36.4
-1.5
3.2
44.7
44.4
Minor BPS
62.2
0.46
1.7
80
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004779
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004934
7336475 - 7351067
14593