Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7345572_7346913_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7345572 - 7346913

Intron Length:

1342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAATGAGA

5'SS Class:

major

3'SS Sequence:

TTGAAATCATTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

ATTTATTTACTT

Flanking Amino Acid:

NKKHGKVRIDNNSENPSTLG

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

65.3

40.4

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

59.5

0.21

57.2

43.1

Minor 5ss

33.4

-1.9

3.1

39.9

40.1

Minor BPS

59.5

0.38

1.8

78.91

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004779

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004934

7336475 - 7351067

14593