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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7347105_7347955_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7347105 - 7347955
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGATT
5'SS Class:
major
3'SS Sequence:
GATTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ACTTTTTTAACC
Flanking Amino Acid:
YIGQWVYGIQHGYGTHIWFL
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
77.1
37.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.4
0.8
0.8
77.2
41.6
Minor 5ss
44.4
-0.6
3.2
66.1
45.1
Minor BPS
75
0.76
1.1
75.75
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004779
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004934
7336475 - 7351067
14593
ENSAPLT00000044439
7336475 - 7351067
14593