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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7348805_7349275_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7348805 - 7349275
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTGATTTAAAT
Flanking Amino Acid:
YWYKGKRHGKGTVFYDWEHT
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
86.6
0.82
0.8
84.6
30.3
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
58.4
0.34
1.7
76.56
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004779
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044439
7336475 - 7351067
14593
ENSAPLT00000004934
7336475 - 7351067
14593