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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7349756_7350022_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7349756 - 7350022
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
AYFEGGNTYKGMFSEGFMHG
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004779
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044439
7336475 - 7351067
14593
ENSAPLT00000004934
7336475 - 7351067
14593