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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7353369_7353745_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7353369 - 7353745
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CATTTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTTACT
Flanking Amino Acid:
MFASRACRKSVMIGTALNIQ
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
81.6
0.71
0.8
78.1
35
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
61.4
0.44
2
85.58
40.4

Associated Gene:

Gene:
PMS2
Ensembl Gene ID:
ENSAPLG00000004599
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004757
7353225 - 7366237
13013