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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7355645_7356500_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7355645 - 7356500
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TTTCTATATACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTCTATATAC
Flanking Amino Acid:
VAEDELRKEISKEMFAKMEI
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.5
0.73
0.9
77.4
34.9
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
53
0.07
1.9
72.59
38.2

Associated Gene:

Gene:
PMS2
Ensembl Gene ID:
ENSAPLG00000004599
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004757
7353225 - 7366237
13013