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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7359822_7360582_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7359822 - 7360582
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTC
Flanking Amino Acid:
NATDMPQNLYSITGFISRCD
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.8
0.62
0.9
73.6
35.4
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
68.2
0.55
1.5
76.09
34.4

Associated Gene:

Gene:
PMS2
Ensembl Gene ID:
ENSAPLG00000004599
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004757
7353225 - 7366237
13013