Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7360681_7361786_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7360681 - 7361786

Intron Length:

1106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTACAT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTAAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TTTTTTTTTAAG

Flanking Amino Acid:

NIGAVFGQKQLQSLIPFVQL

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

66.2

39.1

Major BPS

70.8

0.52

70.6

31.6

Major PPT

88.4

0.86

0.9

94.6

18.5

Minor 5ss

39.8

-1.1

3.1

56.6

47.5

Minor BPS

56.3

0.05

1.8

67.7

39.9

Associated Gene:

Gene:

PMS2

Ensembl Gene ID:

ENSAPLG00000004599

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004757

7353225 - 7366237

13013

ENSAPLT00000040101

7360579 - 7366123

5545