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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7363470_7364568_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7363470 - 7364568
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TATCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATATTTTAAAT
Flanking Amino Acid:
GVEEENFEGLTLKHYTSKIQ
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.8
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.5
0.8
0.8
77.2
36.6
Minor 5ss
45
-0.5
2.8
54.7
43.6
Minor BPS
65.7
0.57
1.4
78.88
36.8

Associated Gene:

Gene:
PMS2
Ensembl Gene ID:
ENSAPLG00000004599
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040101
7360579 - 7366123
5545
ENSAPLT00000004757
7353225 - 7366237
13013