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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7365298_7365913_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7365298 - 7365913
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCG|GCATGGCGC
5'SS Class:
major
3'SS Sequence:
TTGCAGCCCGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAG
U12 Branch Point Sequence:
TCTCTTTGCAGC
Flanking Amino Acid:
PRAAASPCTSPAKAIRAIDS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
58.2
43.6
Major BPS
51.1
0.03
1.8
71.4
45.1
Major PPT
47.5
-0.1
1.7
50.7
39
Minor 5ss
27.3
-2.6
4.1
41.7
45.2
Minor BPS
41.3
-0.7
2
51.33
40.2

Associated Gene:

Gene:
PMS2
Ensembl Gene ID:
ENSAPLG00000004599
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040101
7360579 - 7366123
5545