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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7370886_7371388_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7370886 - 7371388
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATC
Flanking Amino Acid:
QLQGSDYDFKSDMYSLGVIL
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.3
0.7
0.8
72.8
36.8
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
70.2
0.62
1.7
81.43
33.4

Associated Gene:

Gene:
EIF2AK1
Ensembl Gene ID:
ENSAPLG00000004173
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004324
7370052 - 7387116
17065