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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7376484_7378114_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7376484 - 7378114
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGATTC
5'SS Class:
major
3'SS Sequence:
AAATTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTAAGCTGAAAT
Flanking Amino Acid:
KYSERTEKTASPYHLVDVNW
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70
35.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
66.4
0.37
1.1
69
41.1
Minor 5ss
44.7
-0.6
3.1
65.4
39.7
Minor BPS
49.3
0.03
2
72.38
43.5

Associated Gene:

Gene:
EIF2AK1
Ensembl Gene ID:
ENSAPLG00000004173
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004324
7370052 - 7387116
17065