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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7380860_7381265_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7380860 - 7381265
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATTT
5'SS Class:
weak_major
3'SS Sequence:
TTGGTCCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAGAA
U12 Branch Point Sequence:
GAGTAAAGAACA
Flanking Amino Acid:
KKATRRDCMKVLREVKVLAG
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
74.2
37.1
Major BPS
50.4
0.01
1.1
47.3
36.1
Major PPT
67
0.38
1
66.6
40.6
Minor 5ss
69.3
0.65
2.3
82.5
37.1
Minor BPS
40.9
-0.7
2
50.35
39.4

Associated Gene:

Gene:
EIF2AK1
Ensembl Gene ID:
ENSAPLG00000004173
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004324
7370052 - 7387116
17065