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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7392077_7392809_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7392077 - 7392809
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCTTTTTAAAT
Flanking Amino Acid:
KSKPFAQRDLIINDGIAPPQ
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.9
0.67
0.9
73.7
35.9
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
65.7
0.57
1.4
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026175
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043922
7391848 - 7394542
2695