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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7412677_7413641_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7412677 - 7413641
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TATTTGTTAACC
Flanking Amino Acid:
EEKEEWIKSIKASISRDPFY
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
85.6
0.8
0.6
84.6
23.2
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
66.8
0.51
2
79.05
36.2

Associated Gene:

Gene:
CYTH3
Ensembl Gene ID:
ENSAPLG00000003580
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003715
7412604 - 7434539
21936