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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7413968_7414044_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7413968 - 7414044
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCTTCGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
AATGTGGTATTT
Flanking Amino Acid:
NCLYYFEYTTDKEPRGIIPL
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
82.4
0.73
0.8
80.7
31.3
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
36.2
-0.9
2.5
54.09
42.4

Associated Gene:

Gene:
CYTH3
Ensembl Gene ID:
ENSAPLG00000003580
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003715
7412604 - 7434539
21936