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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7414122_7420191_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7414122 - 7420191
Intron Length:
6070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTATCGATACCT
Flanking Amino Acid:
PDREGWLLKLGGRVKTWKRR
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.9
0.65
0.9
73.3
35.9
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
48.1
-0
2.5
77.78
44.2

Associated Gene:

Gene:
CYTH3
Ensembl Gene ID:
ENSAPLG00000003580
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003715
7412604 - 7434539
21936