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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7423243_7425163_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7423243 - 7425163
Intron Length:
1921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
AGTCTAACAACT
Flanking Amino Acid:
FADLNLVQALRQFLWSFRLP
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
67
0.42
1.1
57.7
39
Major PPT
84.2
0.77
0.6
80.8
24.4
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
43.7
-0.4
1.9
63.57
39.6

Associated Gene:

Gene:
CYTH3
Ensembl Gene ID:
ENSAPLG00000003580
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003715
7412604 - 7434539
21936