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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7433365_7433798_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7433365 - 7433798
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCTTTTTATTT
Flanking Amino Acid:
EIDNLTSVEESKTTQRNKQI
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.5
0.46
0.9
65.8
34.8
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
57.7
0.32
1.6
71.36
40.7

Associated Gene:

Gene:
CYTH3
Ensembl Gene ID:
ENSAPLG00000003580
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003715
7412604 - 7434539
21936