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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7495528_7501730_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7495528 - 7501730
Intron Length:
6203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTCTTTTTACA
Flanking Amino Acid:
QAIKCVVVGDGAVGKTCLLI
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
95.3
1.02
0.5
91.2
20.6
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
63.5
0.42
1.6
76.13
34.5

Associated Gene:

Gene:
RAC1
Ensembl Gene ID:
ENSAPLG00000003568
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003645
7495493 - 7509161
13669