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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7511978_7513139_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7511978 - 7513139
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TCACCTGTGACA
Flanking Amino Acid:
IHIVEECSSKRLCSSDIKYT
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
78.3
0.7
1
80
32.1
Major PPT
82.4
0.73
0.8
81.2
36.5
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
48.1
-0.1
2
60.08
40.1

Associated Gene:

Gene:
DAGLB
Ensembl Gene ID:
ENSAPLG00000003340
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003435
7511785 - 7520166
8382