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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7513394_7514362_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7513394 - 7514362
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGAATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAATT
Flanking Amino Acid:
RIVANCNRPKYQILLRGCWY
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
83.2
30.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.1
0.61
1
74.8
39
Minor 5ss
40.6
-1.1
2.6
50.9
45.5
Minor BPS
72.1
0.77
1.3
84.15
37

Associated Gene:

Gene:
DAGLB
Ensembl Gene ID:
ENSAPLG00000003340
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003435
7511785 - 7520166
8382