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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7514598_7514994_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7514598 - 7514994
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GGTATCTAAAGC
Flanking Amino Acid:
YAFSPPGGLLSKTLADYTKH
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
46.6
-0.2
2
56.05
42.2

Associated Gene:

Gene:
DAGLB
Ensembl Gene ID:
ENSAPLG00000003340
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003435
7511785 - 7520166
8382