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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7519027_7520085_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7519027 - 7520085
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGATGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTCTTTAAAC
Flanking Amino Acid:
IAELFRNYFSDTDLVPSDIA
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
57.5
42.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80
0.67
0.9
77.7
34.4
Minor 5ss
39.5
-1.2
3.1
53.1
44.7
Minor BPS
77.7
0.85
1.2
82.16
30.9

Associated Gene:

Gene:
DAGLB
Ensembl Gene ID:
ENSAPLG00000003340
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003435
7511785 - 7520166
8382