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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7519897_7522655_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7519897 - 7522655
Intron Length:
2759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTTAATAAC
5'SS Class:
weak_major
3'SS Sequence:
TCACAAATGTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TCTCCCATCACA
Flanking Amino Acid:
ALVYVSMQGKEAVRRQYFLC
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.2
60.5
38.4
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
44.7
-0.3
1.7
47.9
43.5
Minor 5ss
33
-1.9
2.6
34.7
34.7
Minor BPS
52.9
0.08
2.1
69.79
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026279
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030689
7519746 - 7523288
3543