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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7522815_7523193_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7522815 - 7523193
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGCGC
5'SS Class:
major
3'SS Sequence:
TACCTTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GTTTCCTTATCT
Flanking Amino Acid:
GAFELSLRLLWWIGILVLYA
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
56.6
42.5
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
70.7
0.47
0.8
66
29.7
Minor 5ss
25.8
-2.8
3.1
29.7
37.2
Minor BPS
79.7
1.01
1.5
93.06
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026279
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030689
7519746 - 7523288
3543