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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_752420_753251_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
752420 - 753251
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGGAG
U12 Branch Point Sequence:
CTCCCCCTGAAG
Flanking Amino Acid:
LSAGIFFVSAGLSNIIGIIV
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
37
-0.8
1.7
30.7
44
Major PPT
68.5
0.42
1
68.2
25.8
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
45.7
-0.4
1.9
50.09
43.7

Associated Gene:

Gene:
CACNG3
Ensembl Gene ID:
ENSAPLG00000018170
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019763
751908 - 758889
6982