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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7525156_7525932_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7525156 - 7525932
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATA
Flanking Amino Acid:
CDFFYLYVTKVLKGKKLSLP
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
71.1
0.66
1.7
82.68
32.7

Associated Gene:

Gene:
KDELR2
Ensembl Gene ID:
ENSAPLG00000002978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003025
7525121 - 7536615
11495